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BLAST
Algorithm
BLASTN (NT query -> NT db)
BLASTP (AA query -> AA db)
BLASTX (NT query -> AA db)
TBLASTN (AA query -> NT db)
TBLASTX (NT query trans. -> NT db trans.)
Query name
Supply query via manually entered sequence.
Supply query via file.
Query Sequence
Query file
Database
Bd21-1 Genome
Bd21-1 CDS
Bd2-3 Root Tips
Bd18-1 Root Tips
Bd21 Abiotic and Biotic Stress
Bd21 Developing Seeds
Bd21 Callus
Bd21 Diurnally Sampled Flowers
Bd21 Diurnally Sampled Roots
Bd21 Diurnally Sampled Whole Seedlings
Bd21 Flower and Flower Drought
Bd21 Diurnally Sampled Leaves and Stems
Bd21 Leaf and Leaf Drought
Bd21 Roots
Bd21 Superpool
Leaf
Seed
Bd21 Root Tips
Stem
Bd3-1/Bd3-2 Root Tips
Identify conserved domains in the query sequence(s).
Display results in browser window.
Send an email linking to the results on completion.
Email
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Advanced Options
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Expectation threshold
1e **
Scoring matrix
BLOSUM62
BLOSUM80
BLOSUM50
BLOSUM45
BLOSUM90
PAM30
PAM70
PAM250
Word size
Allow gaps
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